Hmmmmmm. Well you should know better than I do, but I've never been able to get them to deploy automaticly. Mining drones however are a whole nother story. They always deploy, and you don't even need to set the waypoint anywhere near it to extract them. In fact I've done it manually while flying the shuttle and if you are in like 50 klicks you can extract them. It made life a lot easier to sit there and unload them, drop them. Fly to earth starbase without having to move.
At the risk of going off topic I think VTOL flight has some serious problems with it. I cannot hover without either taking off(thrust too high) or crashing(thrust too low), the only way I can get them to hover is to holddown 5 and it's pretty useless like that.
I wasn't having this problem til the G patch, going to install the new one now. If it keeps up I am going to just do like everyone else and use OTS for surface ops.
Oh, and how do I get rid of the email notification for this thread?